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  • mariana.ft
    Junior Member
    • Apr 2012
    • 2
    #1

    mirDeep-2 novel miRNA identification

    Dear all

    I would like to use mirDeep_2 for to identify novel miRNAs but I'm not sure which tool should I use, could you please let me know which one have you use?

    Thanks a lot!
    mariana.ft
    Tags: bioinfomatics, mirnaseq, rna sequencing
    • babi2305
      Member
      • Feb 2013
      • 14
      #2
      Originally posted by mariana.ft View Post
      Dear all

      I would like to use mirDeep_2 for to identify novel miRNAs but I'm not sure which tool should I use, could you please let me know which one have you use?

      Thanks a lot!
      Hi,

      I am using mirDeep2 for miRNA prediction and its super fast, generating very nice output files. Are you looking for other miRNA prediction tools? I would suggest first you must start with mirDeep2.

        Comment

        • ninad
          Member
          • Aug 2011
          • 16
          #3
          miRNA Expression Analysis tool?

          HI miRDeep to only dtects the novel miRNAs or does it also give normalized expression data for all known RNAs? Which is the best tool to analyze miRNAseq data?

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