Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • #1

    Virus polymorphism Segminator

    I have been using GATK tools (mapping done with Mosaik) and Segminator II (using FASTQ data) to map polymorhism in virus resequencing (Ion Torrent). Comparing the results from these two tools, I did notice that with GATK-Unified Genotyper I did map way less polymorphic sites than using Segminator II. Now I am wondering which would be the best way for variation detection in viruses? Anyone has experience with Segminator II? For a biologist it is a really handy, but would like to have opinions from other users.
    Tuike
    Tags: polymorphism, segminator, virus
  • #2
    I have exactly similar query for my virus resequencing data. Any help in this regard will be highly appreciated. Please let me know if you manage to get some clue as to which tool will be an ideal one in this scenario.

    Jyoti

    Comment

    Previous template Next

    Latest Articles

    Collapse
    • seqadmin
      Essential Discoveries and Tools in Epitranscriptomics
      by seqadmin




      The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
      04-22-2024, 07:01 AM
    • seqadmin
      Current Approaches to Protein Sequencing
      by seqadmin


      Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
      04-04-2024, 04:25 PM
    View All

    ad_right_rmr

    Collapse

    News

    Collapse
    Topics Statistics Last Post
    Expanding the Horizons of Cellular Research with the Single Cell Atlas by seqadmin
    Started by seqadmin, Today, 11:49 AM
    0 responses
    10 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    Today, 11:49 AM  
    Genetic Variants and Diabetes Risk in Childhood Cancer Survivors by seqadmin
    Started by seqadmin, Yesterday, 08:47 AM
    0 responses
    16 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    Yesterday, 08:47 AM  
    Cancer Metastasis: A Deep Dive into Cellular Plasticity by seqadmin
    Started by seqadmin, 04-11-2024, 12:08 PM
    0 responses
    61 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    04-11-2024, 12:08 PM  
    Proteogenomic Profiles Offer New Clues in Prostate Cancer by seqadmin
    Started by seqadmin, 04-10-2024, 10:19 PM
    0 responses
    60 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    04-10-2024, 10:19 PM  
    View All
    Working...
    X