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  • IBseq
    replied
    hi
    did you get an answer?

    ib


    Originally posted by ashNZ View Post
    Gday all,

    I am attempting to use SOAPsnpZ to call SNPs from SOLiD data that I aligned using SOAP2. After conducting the alignment I 'sorted' the output .txt file and when I try to feed it into the SNP caller I am getting this error message pretty much straight after program execution:


    Reading Chromosome and dbSNP information Done.
    terminate called after throwing an instance of 'std:ut_of_range'
    what(): basic string::substr


    Can anyone help me to solve this problem? It would be greatly appreciated! This is my first time using SOAP so I am still very much a beginner.

    Cheers
    Ash

    Leave a comment:


  • ashNZ
    started a topic SOAPsnpZ error : 'std::out_of_range'

    SOAPsnpZ error : 'std::out_of_range'

    Gday all,

    I am attempting to use SOAPsnpZ to call SNPs from SOLiD data that I aligned using SOAP2. After conducting the alignment I 'sorted' the output .txt file and when I try to feed it into the SNP caller I am getting this error message pretty much straight after program execution:


    Reading Chromosome and dbSNP information Done.
    terminate called after throwing an instance of 'std:ut_of_range'
    what(): basic string::substr


    Can anyone help me to solve this problem? It would be greatly appreciated! This is my first time using SOAP so I am still very much a beginner.

    Cheers
    Ash
    Last edited by ashNZ; 10-09-2013, 06:21 AM.

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