SOAPsnpZ error : 'std::out_of_range'

[ashNZ]

Gday all,

I am attempting to use SOAPsnpZ to call SNPs from SOLiD data that I aligned using SOAP2. After conducting the alignment I 'sorted' the output .txt file and when I try to feed it into the SNP caller I am getting this error message pretty much straight after program execution:


Reading Chromosome and dbSNP information Done.
terminate called after throwing an instance of 'std:ut_of_range'
what(): basic string::substr


Can anyone help me to solve this problem? It would be greatly appreciated! This is my first time using SOAP so I am still very much a beginner.

Cheers
Ash

[IBseq]

hi
did you get an answer?

ib

Gday all,

I am attempting to use SOAPsnpZ to call SNPs from SOLiD data that I aligned using SOAP2. After conducting the alignment I 'sorted' the output .txt file and when I try to feed it into the SNP caller I am getting this error message pretty much straight after program execution:


Reading Chromosome and dbSNP information Done.
terminate called after throwing an instance of 'std:ut_of_range'
what(): basic string::substr


Can anyone help me to solve this problem? It would be greatly appreciated! This is my first time using SOAP so I am still very much a beginner.

Cheers
Ash