Hi there,
I have gene-prediction output from three different predictors (augustus, genscan, fgenesh). Now I want to create a consesus sequence by useing JIGSAW but I already failed to get the tutorial run. The program is throwing this error and a realy have no clue why?
My Command:
./train_jigsaw.pl -f seq -e /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/my_train_dir/my_evidence_list.txt -d /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/my_train_dir -l /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/my_train_dir/my_dir_list.txt -t
"Output":
write: /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/42492/42492.my_evidence_list.txt
[jigsaw -f /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/42492/42492.seq -e /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/42492/42492.my_evidence_list.txt -t /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/my_train_dir/42492.ev_vec -d /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/my_train_dir -q 50]
unable to open [/home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/my_train_dir/42492.ev_vec.start]
after this line the program stopps
does anyone have had the same problem and figured out how to solve it?
Many Thansk in advance
I have gene-prediction output from three different predictors (augustus, genscan, fgenesh). Now I want to create a consesus sequence by useing JIGSAW but I already failed to get the tutorial run. The program is throwing this error and a realy have no clue why?
My Command:
./train_jigsaw.pl -f seq -e /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/my_train_dir/my_evidence_list.txt -d /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/my_train_dir -l /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/my_train_dir/my_dir_list.txt -t
"Output":
write: /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/42492/42492.my_evidence_list.txt
[jigsaw -f /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/42492/42492.seq -e /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/42492/42492.my_evidence_list.txt -t /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/my_train_dir/42492.ev_vec -d /home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/my_train_dir -q 50]
unable to open [/home/nancy/programs/JIGSAW/jigsaw-3.2.10/tutorial/my_train_dir/42492.ev_vec.start]
after this line the program stopps
does anyone have had the same problem and figured out how to solve it?
Many Thansk in advance
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