ARDEN gives wrong sequence result

[Medhat]

Hi,

I am using ARDEN to make artificial sequence from the original one which is 2.5 GB fasta file the result file is only 500 kb.

This is the command I am using

 python arden-create ./genomeTest/ /data/qdata/public/illumina-genomes/Zea_mays/Ensembl/AGPv2/Sequence/Bowtie2Index/genome.fa -d 21 -o 0 -n maize

and print out in the terminal

########Some stats:########
DNA length: 569630
max substitutions: 27125
#Balanced Mutations: 9206
#hamming distance REF-ART 18412
avg. distance: 30.9379752335
###########################

any idea


Edit:
The answer to my question is ARDEN only works with one chromosome per time so i can not run it on the whole chromosomes "one file contains the whole genome" at once.