Cufflink installation problem for Linux

[BioTalk]

32- Bit system..How can I try it?

Thank you

[BioTalk]

You need to change the files executable by the command chmod.

With the command Chmod I came to know that the file is executable, but I dont know the exact command, I should write to execute it.

[Xi Wang]

Here is the step wise method what I did :

1. I downloaded Cufflinks-0.8.1.Linux_x86_64.tar.gz
2. Untar Cufflinks-0.8.1.Linux_x86_64.tar.gz
3. Moved cufflinks and cuffcompare to the path
4. tried to execute Cufflinks and cuffcompare with ./cufflinks and ./cuffcompare respectively.
5. Also I tried to give input of sam file with the command cuffliinks test_data.sam

But it is throwing the error "Cannot execute binary file" every time I write any command. Please let me know if there are some other commands to work with it.

Thank you

EDIT: you may use the 32-bit system. I just tried a 32 bit system, it threw this error.
you should download the source code, and compile it yourself.

[BioTalk]

Download cufflinks-0.8.1.Linux_x86_64.tar.gz
Untar it: tar xvfz cufflinks-0.8.1.Linux_x86_64.tar.gz
Move cufflinks and cuffcompare to your PATH.

Here is the step wise method what I did :

1. I downloaded Cufflinks-0.8.1.Linux_x86_64.tar.gz
2. Untar Cufflinks-0.8.1.Linux_x86_64.tar.gz
3. Moved cufflinks and cuffcompare to the path
4. tried to execute Cufflinks and cuffcompare with ./cufflinks and ./cuffcompare respectively.
5. Also I tried to give input of sam file with the command cuffliinks test_data.sam

But it is throwing the error "Cannot execute binary file" every time I write any command. Please let me know if there are some other commands to work with it.

Thank you

[Xi Wang]

It's a Linux Binary but it is not working.

Can someone please write step wise commands/procedure to make it work!!

Thank you

How do you know it's a Linux Binary? Where did you get it?

[Boel]

step wise

Download cufflinks-0.8.1.Linux_x86_64.tar.gz
Untar it: tar xvfz cufflinks-0.8.1.Linux_x86_64.tar.gz
Move cufflinks and cuffcompare to your PATH.

[BioTalk]

It's a Linux Binary but it is not working.

Can someone please write step wise commands/procedure to make it work!!

Thank you

[drio]

Hey Guys,
I am trying to install "Cufflink" in Linux machine but it is throwing an error "Cannot execute.exe file" every time, I try to execute Cufflinks.exe or any other exe files.

Please help me if anyone know how to handle this..

Thank you.

Make sure you get the Linux binary:

http://cufflinks.cbcb.umd.edu/downloads/cufflinks-0.8.1.Linux_x86_64.tar.gz

[hdchen]

I think .exe file is for windows, not Linux. I'm not a Linux guy and I'm not sure.

[DrD2009]

Hey Guys,
I am trying to install "Cufflink" in Linux machine but it is throwing an error "Cannot execute.exe file" every time, I try to execute Cufflinks.exe or any other exe files.

Please help me if anyone know how to handle this..

Thank you.