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We can remove N from sequences:
transliterate_seq -d nN | analyze_gc
transliterate_seq -d nN | analyze_gc
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biopieces installation error _ruby not getting recognized !!
Hi
While installing with installer.sh, I got following error
I guess its not recognizing the ruby installation.....Code:yk@yk-ubuntu:~/Desktop$ ./biopieces_installer-0.43.sh Welcome to the Biopieces installer. This installer is experimental, and is being evaluated to replace the previous, tedious way: http://code.google.com/p/biopieces/wiki/Installation The installer will now do the following: * Check for existing Biopieces installation. * Check prerequisites: - Subversion client - Perl - Perl modules - Ruby - Ruby gems - Auxillary programs * Create installation directories. * Download code from repository. * Set environment in .bashrc. * Run tests Problems? Check out the FAQ: http://code.google.com/p/biopieces/wiki/FAQ Help is available at the Biopieces Google Group: http://groups.google.com/group/biopieces Bugs & issues: http://code.google.com/p/biopieces/issues/list Continue (yes/no)? y Checking for existing Biopieces installation: No installation of Biopeices found. Continue (yes/no)? y Testing prerequisites: Testing if the running shell is bash: OK Testing subversion client - "svn": OK Testing Perl version: OK Testing required Perl module - "Inline": OK Testing required Perl module - "JSON::XS": OK Testing required Perl module - "SVG": OK Testing required Perl module - "Bit::Vector": OK Testing required Perl module - "Time::HiRes": OK Testing Ruby version: FAIL abort yk@yk-ubuntu:~/Desktop$ ruby --version ruby 1.8.7 (2010-08-16 patchlevel 302) [x86_64-linux] yk@yk-ubuntu:~/Desktop$
Any suggestions ??Comment
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I tried with Ruby-1.9 also. same error again.Comment
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The problem is your Ruby version. It is often a problem that ruby version 1.8 and 1.9 are mixed up depending on how they were installed.
Should tell you that you are running at least version 1.9. You may have a ruby1.9 binary, and in that case you should create a symlink.Code:ruby --version
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