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Complete Genomics CNVs and SVs

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  • Complete Genomics CNVs and SVs

    Any suggestions for tools/pipelines to identify CNVs and SVs from Complete Genomics data? Anyone with any experience doing this?

    Has anyone tested how well any of the following tools work when using the sam/bam files created by the evidence2sam function in CGAtools?

    CNVnator
    RDXplorer
    BreakDancer
    GASV

    Fell free to comment on anything you have tried.
    I will update this thread as I try different tools.
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