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  • chariko
    Member
    • Jun 2010
    • 56

    Problems with galaxy bedgraph to bigwig

    I am trying to convert a bedgraph file ta bigwig file using galaxy (not able to do in linux since the bedGraphToBigWig script runs only in 64 bits and I am running 32 bits version).

    I upload my bedgraph file and afterwards my genome file (genome.txt) which looks like the following:
    contig1 32486
    (name) (number of bases)

    When I execute the Wig/bedgraph to bigWIg in galaxy it tells me:

    Unspecified genome build, click the pencil icon in the history item to set the genome build.

    How can I tell Galaxy my genome build is genome.txt? Is the format of my genome.txt wrong?
  • tnabtaf
    Member
    • Jan 2011
    • 53

    #2
    A better place to post this question is https://biostar.usegalaxy.org/

    You can also search for answers at http://galaxyproject.org/search/usegalaxy/

    What you have is known as a custom build in Galaxy. See https://wiki.galaxyproject.org/Learn/CustomGenomes for how to tell Galaxy that that is what it is.

    Comment

    • chariko
      Member
      • Jun 2010
      • 56

      #3
      Thanks, I´ll take a look on biostar.

      Comment

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