Extracting unitigs from Allpaths-LG

[Nordic]

Hello Seq-ers,

I want to extract the unitigs that allpaths constructs in its assembly process for use as high confidence sequence to correct pacbio. All the intermediate files seem to be stored as binary format in an unfamiliar file type. Does anyone know how I can extract the unitigs as fasta format sequence? Thanks!

Cheers,
Jason

[Nordic]

Figured it out

Thanks to Thomas on the google groups page for allpaths I got the answer.

allpathslg/bin/Fastb2Fasta IN=reads.unibases.k96 OUT=unitigs.fa