Hi Everyone,
I am new to SEQanswers and the bioinformatics world, and I am looking for some help. I would like to get a count of allele frequencies in bins from a VCF file (i.e. to create a histogram).
For example, I would like a count of the number of alleles with frequency between 0-0.022, 0.022-0.1, 0.1-0.2, etc.
vcftools outputs the frequencies of each allele at each site, but I would like this summarized by counts within each frequency bin. I am wondering if any of you know of an easy way to do this?
Thanks!
I am new to SEQanswers and the bioinformatics world, and I am looking for some help. I would like to get a count of allele frequencies in bins from a VCF file (i.e. to create a histogram).
For example, I would like a count of the number of alleles with frequency between 0-0.022, 0.022-0.1, 0.1-0.2, etc.
vcftools outputs the frequencies of each allele at each site, but I would like this summarized by counts within each frequency bin. I am wondering if any of you know of an easy way to do this?
Thanks!