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  • fcmChIP
    Junior Member
    • Jun 2011
    • 4

    byte range enabled server for NGS data?

    I use the UCSC genome browser to view NGS data. The browser needs to point a url to a server where data is stored in a binary (bigWig) format. I’ve looked into Google Drive/ iCloud drive/ One Drive. However, UCSC’s access to the files needs to be byte range-enabled, and these guys don’t seem to do this. Seems like I may need to find a dedicated server. At this point, my employer doesn't have a solution allowing UCSC access through the firewall. I’m looking into setting up a web server using MS Azure. Looks like you have to learn some .net programming for this, though, which will take a while.

    Any advice regarding better (easier) solutions would be greatly appreciated.
  • Richard Finney
    Senior Member
    • Feb 2009
    • 701

    #2
    Create your own,local copy of the UCSC browser.

    Comment

    • fcmChIP
      Junior Member
      • Jun 2011
      • 4

      #3
      local UCSC browser

      Thanks,

      I'd wondered about that. I have a MacPro with 32 GB ram, could also upgrade this.

      Comment

      • GenoMax
        Senior Member
        • Feb 2008
        • 7142

        #4
        Originally posted by fcmChIP View Post
        Thanks,

        I'd wondered about that. I have a MacPro with 32 GB ram, could also upgrade this.
        That should be enough. If you work for a commercial entity a license purchase would be required.

        Comment

        • Richard Finney
          Senior Member
          • Feb 2009
          • 701

          #5
          Set up UCSC browser on a Linux box with >2TB hard disk.
          It is not super trivial.

          _______
          "UCSC access through the firewall"
          "a license purchase would be required"

          Ah. I missed that.

          I guess a lot of drug companies don't want China/Russia/NSA/Google to know what genes they're interested in.
          Last edited by Richard Finney; 06-19-2015, 12:38 PM.

          Comment

          • maximilianh
            Member
            • Oct 2009
            • 15

            #6
            Use GBIB

            UCSC GBIB is for your, a virtual machine with almost everything pre-installed:

            Comment

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