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  • chariko
    Member
    • Jun 2010
    • 56
    #1

    Software for determining Genes near peaks?

    Hi all,

    I am interested in getting the list of genes near to my peaks. I have tried different packages but they only give you the nearest gene to your peak. I would be interested in getting a software in which you could get alll the genes up to a distance determined by me.

    Does anybody know whether this exits?

    Thanks in advance
    Tags: chip-seq, gene, location, peak
    • kopi-o
      Senior Member
      • Feb 2008
      • 319
      #2
      There are lots. For example, BEDTools (windowBED) and cisGenome. The online tool Galaxy also has this kind of functionality.

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