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  • gaiusjaugustus
    Junior Member
    • Dec 2015
    • 1

    #1

    PennCNV run error (Can't exec detect_cnv.pl) Linux

    I am trying to get PennCNV working on my computing server. Here's what I've done, per this document: http://penncnv.openbioinformatics.or...guide/install/
    • Downloaded + decompressed
    • loaded perl (5.14.2) & R/2.15.2 modules
    • went to kext folder and used make
    • went to penncnv folder and typed "perl ./detect_cnv.pl". The usage information appears
    • added to my export PATH = statement in my bashrc file, "$HOME/opt/penncnv" where the files are located


    I then went to the example folder to try to run those, using this document as a guide: http://penncnv.openbioinformatics.or...guide/startup/
    • Ran "perl runex.pl", got usage information
    • Ran "perl runex.pl 1", and got "Can't exec detect_cnv.pl: (null) at example/runex.pl line 81"
    • Ran "perl runex.pl -path_detect_cnv ../detect_cnv.pl", same error occurs.
    • Also tried going up to the main penncnv folder and using "perl example/runex.pl 1 -path_detect_cnv detect_cnv.pl", but get the same error.


    Any suggestions/advice?

    Thanks in advance,

    Gaius

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