I am using BFAST+BWA for SOLiD alignment. When I run the following command:
I am only getting one CPU running on my Dual Quad Core Server (which appears as 16 CPU cores). I have run the simple bwa and am getting multiple core usage - so I am pretty sure its not my server and Ubuntu installation.
Does anyone have any suggestions on how to debug?
PHP Code:
bfast bwaaln -t 16 -c -f results/solid0131_20100330_2_bc_WTA_Tumor_Lib2_F3.bmf ref/hg19.fa reads/solid0131_20100330_2_bc_WTA_Tumor_Lib2_F3.fastq
I am only getting one CPU running on my Dual Quad Core Server (which appears as 16 CPU cores). I have run the simple bwa and am getting multiple core usage - so I am pretty sure its not my server and Ubuntu installation.
Does anyone have any suggestions on how to debug?
Comment