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  • bvk
    Member
    • May 2015
    • 65

    #1

    Cannot find 18s and 28s ribosomal RNAs in the GTF file from UCSC

    Hello everyone,

    I couldn't find 18s and 28s rRNA's in the GTF file from UCSC genome browser. I want to map against hg19/GRCh37 genome. Can anyone please tell me from where I can look up for 18s and 28s rRNA regions?

    Thank you in Advance.
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    See this thread: http://seqanswers.com/forums/showthread.php?t=41868

    Comment

    • bvk
      Member
      • May 2015
      • 65

      #3
      Originally posted by GenoMax View Post
      Thank you. So the GTF file has "LSU-rRNA_Hsa" and also "SSU-rRNA_Hsa". It means LSU rRNA: 5S, 5.8S, and 28S
      SSU rRNA: 18 S

      But the GTF file hg19 I'm using have 5S, LSU-rRNA_Hsa, SSU-rRNA_Hsa.

      Why there is no detail about 18S and 28S when it is showing 5S?

      Comment

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