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  • BhariD
    Member
    • Mar 2013
    • 15

    #1

    How to identify differentially expressed genes within a single sample group?

    What are the reasonable ways to identify differentially expressed genes within a Single sample group consisting of 5 replicates with RNA-seq data? There is no second or other group to compare.
    Appreciate your suggestions. Thank you.
  • wdecoster
    Member
    • Oct 2015
    • 97

    #2
    Differentially expressed versus what?

    Comment

    • BhariD
      Member
      • Mar 2013
      • 15

      #3
      With differentially expressed genes, I meant to say genes that are over-expressed or under-expressed within a single experimental group consisting of more than one replicates. There is no second group or 'normal' group to compare the experimental group. For example, how to identify genes over- or under-expressed in tumor samples of a specific cancer type in the absence of 'normal' samples or any other possible secondary experimental group.

      Comment

      • wdecoster
        Member
        • Oct 2015
        • 97

        #4
        But "differentially expressed" implies you compare group A with group B to find differences between the groups.

        Comment

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