I have around 1,00,000 .sff files that i want to use for doing an assembly with Newbler.
What would be the best strategy to use?
1)Combine the .sff files? Please let me know how i would do the combining.
2)Add each sff file individually by a batch script which uses addRun to add each file and then run the assembler?
Note:I cant get these sff files as a single pre-combined file and need to either combine them by converting them to FASTA and quality files and back again into sff files.
Could anybody please let me know if there is a easier way?
Thanks
What would be the best strategy to use?
1)Combine the .sff files? Please let me know how i would do the combining.
2)Add each sff file individually by a batch script which uses addRun to add each file and then run the assembler?
Note:I cant get these sff files as a single pre-combined file and need to either combine them by converting them to FASTA and quality files and back again into sff files.
Could anybody please let me know if there is a easier way?
Thanks
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