Database for pathogenomics

iltisanni

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#1

Database for pathogenomics

01-10-2018, 02:58 AM

Hi,

we sequenced some organisms and want to know whether they are human-pathogen (toxic).
Does anyone know if a special database exists where I can scan my assembly scaffolds and check if my organism is pathogen?

Last edited by iltisanni; 01-15-2018, 10:52 PM.
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iltisanni

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Join Date: Mar 2017

Posts: 21
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#2

05-16-2018, 05:12 AM

For those of you who are searching for something like me.

VFDB: Virulence Factors of Bacterial Pathogens

http://www.mgc.ac.cn/VFs/main.htm

Virulence factors are defined as those factors or agents that allow an organism to become established in a host or to maintain the disease state once an infection has been established. VFDB is a large collection of VFs from various medical significant bacterial pathogens

I think this db is quite helpful and you can download it to yout local drive.
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