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  • Database for pathogenomics

    Hi,

    we sequenced some organisms and want to know whether they are human-pathogen (toxic).
    Does anyone know if a special database exists where I can scan my assembly scaffolds and check if my organism is pathogen?
    Last edited by iltisanni; 01-15-2018, 10:52 PM.

  • #2
    For those of you who are searching for something like me.

    Virulence factors are defined as those factors or agents that allow an organism to become established in a host or to maintain the disease state once an infection has been established. VFDB is a large collection of VFs from various medical significant bacterial pathogens


    I think this db is quite helpful and you can download it to yout local drive.

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