Hey there,
I came across this really odd situation and have no idea about what to do. I’ve just installed Velvet-1.2.10 and realized that the “velvetg” script is actually in blank!
~/velvet_1.2.10
more velvet*
::::::::::::::
velvetg
::::::::::::::
******** velveth: Not a text file ********
./velvetg = return nothing
./velveth = return usage/help
I installed velvet following the manual.
I’ve just run the velveth and no error was reported.
./velveth out_name 31 -fastq.gz ~/read_1_PAIRED.fq.gz ~/read_2_PAIRED.fq.gz
But, running the following return “-bash: ./velvetg: Text file busy”
./velvetg out_name -cov_cutoff 4 > ./velvetg out_name -min_contig_lgth 100
Could anyone help me? I believe I am missing something but I could not realize what.
Thanks
I came across this really odd situation and have no idea about what to do. I’ve just installed Velvet-1.2.10 and realized that the “velvetg” script is actually in blank!
~/velvet_1.2.10
more velvet*
::::::::::::::
velvetg
::::::::::::::
******** velveth: Not a text file ********
./velvetg = return nothing
./velveth = return usage/help
I installed velvet following the manual.
I’ve just run the velveth and no error was reported.
./velveth out_name 31 -fastq.gz ~/read_1_PAIRED.fq.gz ~/read_2_PAIRED.fq.gz
But, running the following return “-bash: ./velvetg: Text file busy”
./velvetg out_name -cov_cutoff 4 > ./velvetg out_name -min_contig_lgth 100
Could anyone help me? I believe I am missing something but I could not realize what.
Thanks
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