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  • b.soriano
    Junior Member
    • Mar 2019
    • 2

    Extract annotated differentially methylated sites using methylkit

    Hi everybody,

    I've obtained differentially methylated sites and its annotation using the
    R package called methylkit. What I want is to export a table with the following data:

    - chromosome
    - start
    - end
    - strand
    - pvalue
    - qvalue
    - differential methylation value
    - associated feature (promoter, exon, intron...)
    - name of the nearest gene

    How can I do this?

    Thanks in advance!

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