I used DeepSeq to identify novel SNPs in targeted amplicon regions. I have annotated these SNPs using variant classifier. However, I am yet to find a tool that can graphically display these SNPs in their genomic context. I was wondering if their is a stand alone tool, or perhaps something as part of a pipeline programme i can tap into? Anyone know of any?
-
-
You can use custom tracks in the UCSC Genome Browser. http://genome.ucsc.edu/index.html
You can also setup a local installation of this, if you prefer this. -
Not my field, but is Flapjack relevant?
Comment
-
I really like the Integrative Genomics Browser lately:
Comment
-
Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?
Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...10-14-2026, 09:55 AM -
Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
Comment