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I used DeepSeq to identify novel SNPs in targeted amplicon regions. I have annotated these SNPs using variant classifier. However, I am yet to find a tool that can graphically display these SNPs in their genomic context. I was wondering if their is a stand alone tool, or perhaps something as part of a pipeline programme i can tap into? Anyone know of any?
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You can use custom tracks in the UCSC Genome Browser. http://genome.ucsc.edu/index.html
You can also setup a local installation of this, if you prefer this. -
Not my field, but is Flapjack relevant?
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I really like the Integrative Genomics Browser lately:
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Innovations in next-generation sequencing technologies and techniques are driving more precise and comprehensive exploration of complex biological systems. Current advancements include improved accessibility for long-read sequencing and significant progress in single-cell and 3D genomics. This article explores some of the most impactful developments in the field over the past year.
Long-Read Sequencing
Long-read sequencing has seen remarkable advancements,...12-02-2024, 01:49 PM
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