Hi,
I have a question regarding the 454 transcriptome (cdna) analysis.
Would it be correct to assume that a 454AllContigs.fna in newbler cDNA assembly directory is a non-redundant version of -all- the reference bases that are in the 454Isotigs.fna file?
I would like to carry out a read mapping on a set where there are no exons in multiple isotigs but is represented only once (in contigs) so that the mapping quality is kept high when using bwa bwasw.
Thanks for answers.
I have a question regarding the 454 transcriptome (cdna) analysis.
Would it be correct to assume that a 454AllContigs.fna in newbler cDNA assembly directory is a non-redundant version of -all- the reference bases that are in the 454Isotigs.fna file?
I would like to carry out a read mapping on a set where there are no exons in multiple isotigs but is represented only once (in contigs) so that the mapping quality is kept high when using bwa bwasw.
Thanks for answers.
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