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  • nholden
    Junior Member
    • Oct 2021
    • 1

    #1

    CLC main workbench: search local BLAST DB field 'name'

    Hi, I'm using CLC Main Workbench and need some advice on using the search facility.
    I have a local Blast database generated from genome contigs, some of which have annoying 'name' fields, e.g. 'NODE_39_length_42667_cov_21.7047_ID_8307' that don't specify the genome ID name.
    I can't get the search facility to pull out the genomes from my CLC file manager, says No Results, although I know they are in there.
    What am I doing wrong?!
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  • yannickwurm
    Junior Member
    • Jan 2009
    • 8

    #2
    I don't know about CLC workbench.

    But in our SequenceServer BLAST software you can just click to download a FASTA of the hit sequence (or select several hit sequences). E.g. in the screenshot below see the download button under each hit, and a section allowing batch downloads on the left.

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