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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
How to set -max_coverage in velvetg by reubennowell
Started by reubennowell, 04-16-2013, 07:43 AM
17 responses
4,965 views
0 reactions
 Last Post hakattack
by hakattack
05-09-2013, 01:55 PM  
IGV shows bowtie2 mapped reads not corresponding to genomic sequence by Sarah_Tulin
Started by Sarah_Tulin, 05-09-2013, 10:49 AM
2 responses
3,129 views
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 Last Post Sarah_Tulin
by Sarah_Tulin
05-09-2013, 01:02 PM  
pipeline using GATK by blueskypy
Started by blueskypy, 05-09-2013, 12:00 PM
0 responses
1,127 views
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 Last Post blueskypy
by blueskypy
05-09-2013, 12:00 PM  
human cDNA lengths by slp
Started by slp, 05-09-2013, 10:47 AM
0 responses
1,350 views
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 Last Post slp
by slp
05-09-2013, 10:47 AM  
Complicated Illumina data set - best way to assemble? by jwag
Started by jwag, 05-08-2013, 10:15 AM
4 responses
1,498 views
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 Last Post jwag
by jwag
05-09-2013, 09:49 AM  
-M issues with CD-HIT by bonifera
Started by bonifera, 05-09-2013, 09:42 AM
0 responses
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 Last Post bonifera
by bonifera
05-09-2013, 09:42 AM  
Trouble With Trim_Galore processing paired reads by Dave-bo_Baggins
Started by Dave-bo_Baggins, 05-08-2013, 12:53 PM
4 responses
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 Last Post Dave-bo_Baggins
by Dave-bo_Baggins
05-09-2013, 08:41 AM  
Abyss de novo assembly question by hakattack
Started by hakattack, 05-08-2013, 02:01 PM
4 responses
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 Last Post hakattack
by hakattack
05-09-2013, 07:54 AM  
Estimate contamination in Next Generation Sequencing data by desmo
Started by desmo, 05-09-2013, 06:55 AM
1 response
2,641 views
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 Last Post JackieBadger
by JackieBadger
05-09-2013, 07:08 AM  
ABySS detailed output? by yaximik
Started by yaximik, 05-09-2013, 05:50 AM
0 responses
1,126 views
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 Last Post yaximik
by yaximik
05-09-2013, 05:50 AM  
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