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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
STAR-alignment/confusion with mismatches & multi-mapping parameter by babi2305
Started by babi2305, 02-20-2013, 08:10 AM
9 responses
21,062 views
0 reactions
 Last Post alexdobin
by alexdobin
05-07-2013, 12:45 PM  
LD block computation, HaploView? by liu_xt005
Started by liu_xt005, 05-07-2013, 11:24 AM
0 responses
2,065 views
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 Last Post liu_xt005
by liu_xt005
05-07-2013, 11:24 AM  
how to compute Minor Allele Frequency for a variant call? by BhariD
Started by BhariD, 05-07-2013, 10:50 AM
0 responses
5,058 views
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 Last Post BhariD
by BhariD
05-07-2013, 10:50 AM  
BLAST best hit? by mhadidi2002
Started by mhadidi2002, 05-07-2013, 03:56 AM
1 response
3,290 views
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 Last Post rhinoceros
by rhinoceros
05-07-2013, 10:32 AM  
how is the minimum read counts to do a transcriptome assembly? by mruizm
Started by mruizm, 05-07-2013, 07:11 AM
3 responses
1,728 views
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 Last Post mruizm
by mruizm
05-07-2013, 10:31 AM  
New alignment algorithm in the works, feedback needed! by Dakduif
Started by Dakduif, 05-07-2013, 05:42 AM
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1,862 views
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 Last Post Dakduif
by Dakduif
05-07-2013, 05:42 AM  
freebayes SNP QUAL by chrishah
Started by chrishah, 08-30-2012, 08:10 AM
7 responses
13,832 views
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 Last Post rob123king
by rob123king
05-07-2013, 04:48 AM  
Extract sequence from single OTU 454 by emartinez
Started by emartinez, 05-06-2013, 02:34 AM
2 responses
2,737 views
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 Last Post Palecomic
by Palecomic
05-06-2013, 11:44 PM  
Normalizing to input by biznatch
Started by biznatch, 01-10-2011, 10:39 AM
5 responses
9,716 views
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 Last Post simonandrews
by simonandrews
05-06-2013, 11:38 PM  
use a microarray-based R package with RNAseq data? by piemmea
Started by piemmea, 05-06-2013, 02:20 PM
1 response
2,279 views
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 Last Post shi
by shi
05-06-2013, 02:26 PM  
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