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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Sticky: ICGC-TCGA DREAM Somatic Mutation Calling Challenge by khoulahan
Started by khoulahan, 01-27-2014, 06:15 AM
8 responses
131,264 views
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 Last Post locday123
by locday123
01-16-2016, 12:34 AM  
Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
105,218 views
0 likes
 Last Post Guest's Avatar
by Guest
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
671,980 views
0 likes
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
How to manually curate a specific region in a genome assembly? by anikdutta
Started by anikdutta, 01-28-2022, 05:29 AM
0 responses
855 views
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 Last Post anikdutta
by anikdutta
01-28-2022, 05:29 AM  
Free & Open Environment for NGS analysis: Galaxy (http://usegalaxy.org) by nekrut
Started by nekrut, 03-22-2010, 12:33 PM
38 responses
28,671 views
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 Last Post Abigail41
by Abigail41
01-25-2022, 10:54 PM  
fastq-dump on SRA files by harlock0083
Started by harlock0083, 07-06-2011, 10:50 AM
15 responses
30,619 views
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 Last Post kausikmhg
by kausikmhg
01-25-2022, 02:49 AM  
samtools v1.7 flagstat tsv output formats by akoontz11
Started by akoontz11, 01-20-2022, 09:14 AM
1 response
956 views
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 Last Post akoontz11
by akoontz11
01-20-2022, 09:23 AM  
Downloading data from ncbi by Cannon
Started by Cannon, 01-13-2022, 04:25 PM
2 responses
1,472 views
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 Last Post Guest's Avatar
by Guest
01-14-2022, 06:43 PM  
How to retrieve the list of genes in multiple chromosome regions in a single run? by armanfiroz
Started by armanfiroz, 01-14-2022, 03:46 AM
1 response
978 views
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 Last Post GenoMax
by GenoMax
01-14-2022, 06:36 PM  
Help with primer designing by prabat
Started by prabat, 01-14-2022, 01:02 AM
0 responses
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 Last Post prabat
by prabat
01-14-2022, 01:02 AM  
RNA-Seq Data Analysis Workshop, February 28 - March 3, 2022 in Berlin by ecSeq Bioinformatics
Started by ecSeq Bioinformatics, 01-10-2022, 02:51 AM
0 responses
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 Last Post ecSeq Bioinformatics
by ecSeq Bioinformatics
01-10-2022, 02:51 AM  
bam file increases in size following base recalibration by lre1234
Started by lre1234, 08-25-2013, 04:46 PM
4 responses
3,054 views
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 Last Post Genom
by Genom
01-07-2022, 01:38 PM  
Which parameter is reflecting the maximum number of mismatches when using bwa aln by btphzxc
Started by btphzxc, 01-05-2022, 11:00 PM
0 responses
995 views
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 Last Post btphzxc
by btphzxc
01-05-2022, 11:00 PM  
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Discovery of Histone-Organized Chromatin in Bacteria by seqadmin
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ESPRESSO: Quantifying transcript isoforms from long-read sequencing by seqadmin
Started by seqadmin, 01-23-2023, 12:48 PM
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Top 11 Takeaways from JP Morgan Healthcare 2023 by seqadmin
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