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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
filtering strategy in exome sequencing and quality control by Groningen
Started by Groningen, 08-07-2012, 07:23 AM
2 responses
3,420 views
0 reactions
 Last Post Yongyong.Ren
by Yongyong.Ren
04-09-2024, 04:06 PM  
Best software/package to construct and compare whole genomes by samd199
Started by samd199, 04-07-2024, 10:24 AM
0 responses
154 views
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 Last Post samd199
by samd199
04-07-2024, 10:24 AM  
RepEnTools: an automated repeat enrichment analysis package for ChIP-seq data by MikeChoud
Started by MikeChoud, 04-03-2024, 09:58 PM
0 responses
154 views
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 Last Post MikeChoud
by MikeChoud
04-03-2024, 09:58 PM  
Issue with Randfold p-value in mirdeep2 for non model organism. by Erick Awuoche
Started by Erick Awuoche, 03-27-2024, 05:41 AM
0 responses
209 views
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 Last Post Erick Awuoche
by Erick Awuoche
03-27-2024, 05:41 AM  
Introducing BBDuk: Adapter/Quality Trimming and Filtering by Brian Bushnell
Started by Brian Bushnell, 04-24-2014, 03:00 PM
362 responses
271,341 views
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 Last Post razorofockham
by razorofockham
03-21-2024, 01:59 PM  
Multifactor Integration into single seuratobject or multiple seuratobjects? (single cell RNAseq) by izy
Started by izy, 03-14-2024, 04:01 AM
0 responses
121 views
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 Last Post izy
by izy
03-14-2024, 04:01 AM  
Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses by ecSeq Bioinformatics
Started by ecSeq Bioinformatics, 03-12-2024, 01:44 AM
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 Last Post ecSeq Bioinformatics
by ecSeq Bioinformatics
03-12-2024, 01:44 AM  
Mapping ChIP-seq paired end data with bowtie2 by erika_
Started by erika_, 03-07-2024, 03:04 AM
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 Last Post erika_
by erika_
03-07-2024, 03:04 AM  
Problem with blastdbcmd. “Error: [blastdbcmd] Skipped TRANSCRIPT/4865” by arredondoea
Started by arredondoea, 03-06-2024, 12:32 PM
0 responses
349 views
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 Last Post arredondoea
by arredondoea
03-06-2024, 12:32 PM  
shournal: A Tool for Bioinformaticians to Boost Research Reproducibility by ecSeq Bioinformatics
Started by ecSeq Bioinformatics, 03-05-2024, 01:22 AM
0 responses
154 views
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 Last Post ecSeq Bioinformatics
by ecSeq Bioinformatics
03-05-2024, 01:22 AM  
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 Last Post SEQadmin2
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