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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Why Is My Uniquely Mapped Read Count in Samtools Higher Than in Bowtie2? by M.Askari
Started by M.Askari, 01-29-2025, 07:58 AM
2 responses
280 views
0 reactions
 Last Post fchatonnet
by fchatonnet
02-12-2025, 02:03 AM  
Single-Cell RNA-Seq Data Analysis: A Practical Introduction (March 17-19, 2025 in Berlin, Germany) by ecSeq Bioinformatics
Started by ecSeq Bioinformatics, 02-12-2025, 12:06 AM
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61 views
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 Last Post ecSeq Bioinformatics
by ecSeq Bioinformatics
02-12-2025, 12:06 AM  
Kraken2 Database Build by gvilly
Started by gvilly, 01-26-2025, 07:38 PM
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178 views
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 Last Post gvilly
by gvilly
01-26-2025, 07:38 PM  
Use Bowtie Index to get sequences using locations by shawn.mek
Started by shawn.mek, 10-28-2013, 06:28 AM
10 responses
5,731 views
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 Last Post tatianaorli
by tatianaorli
01-21-2025, 04:50 AM  
Questions about ITS Region Amplicon Sequencing Quality Using Illumina MiSeq by ksv6178
Started by ksv6178, 11-25-2024, 07:23 PM
1 response
268 views
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 Last Post ovon
by ovon
01-08-2025, 12:40 PM  
How can I filter ASVs by similarity during alignment, in prep for placement into a phylogenetic tree by ovon
Started by ovon, 01-08-2025, 10:45 AM
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 Last Post ovon
by ovon
01-08-2025, 10:45 AM  
GDC Analysis Tool Challenge by dsturgill
Started by dsturgill, 11-18-2024, 02:05 PM
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 Last Post dsturgill
by dsturgill
11-18-2024, 02:05 PM  
BBMap (aligner for DNA/RNAseq) is now open-source and available for download. by Brian Bushnell
Started by Brian Bushnell, 02-19-2014, 01:33 PM
725 responses
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 Last Post nmhannon
by nmhannon
11-14-2024, 01:08 AM  
Base-by-Base Gene Coverage Analysis in .bam Files Using samtools by ynkszlr
Started by ynkszlr, 10-30-2024, 05:22 AM
1 response
468 views
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 Last Post fchatonnet
by fchatonnet
11-13-2024, 01:13 AM  
Tutorial: How CCA alignment and cell label transfer work in Seurat by crazyhottommy
Started by crazyhottommy, 10-26-2024, 06:39 PM
0 responses
159 views
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 Last Post crazyhottommy
by crazyhottommy
10-26-2024, 06:39 PM  
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    16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
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by SEQadmin2
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