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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
mapping to annotated mitochondria by chouza
Started by chouza, 01-29-2013, 10:18 PM
0 responses
1,684 views
0 reactions
 Last Post chouza
by chouza
01-29-2013, 10:18 PM  
protein coding region of transcript assembled by reference by the_august
Started by the_august, 01-23-2013, 10:10 AM
3 responses
1,553 views
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 Last Post Kennels
by Kennels
01-29-2013, 08:49 PM  
Co-culture data to align to multiple genomes by C9r1y
Started by C9r1y, 01-29-2013, 03:07 PM
1 response
1,956 views
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 Last Post swbarnes2
by swbarnes2
01-29-2013, 03:43 PM  
Need run DESeq in Galaxy? Please Help! by byou678
Started by byou678, 01-28-2013, 02:16 PM
1 response
1,529 views
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 Last Post byou678
by byou678
01-29-2013, 02:45 PM  
Tools to remove duplicate reads by fanx
Started by fanx, 11-30-2012, 11:10 PM
3 responses
2,543 views
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 Last Post naragam
by naragam
01-29-2013, 12:36 PM  
filter sequences from rRNA, tRNA by cascoamarillo
Started by cascoamarillo, 03-15-2011, 12:44 PM
8 responses
6,810 views
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 Last Post alisrpp
by alisrpp
01-29-2013, 12:13 PM  
Names of circular plots? by dietmar13
Started by dietmar13, 01-26-2013, 01:46 PM
6 responses
2,074 views
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 Last Post FractalExpression
by FractalExpression
01-29-2013, 10:50 AM  
Compareads: comparing huge metagenomic experiments by NicoM
Started by NicoM, 01-29-2013, 09:18 AM
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 Last Post NicoM
by NicoM
01-29-2013, 09:18 AM  
Software for fungi detection in plant dataset by joanafino
Started by joanafino, 01-29-2013, 07:48 AM
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 Last Post joanafino
by joanafino
01-29-2013, 07:48 AM  
FTP access/downloading RefSeq 57 by tonybert
Started by tonybert, 01-28-2013, 10:53 AM
2 responses
3,600 views
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 Last Post yaximik
by yaximik
01-29-2013, 06:39 AM  
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    Reply to 16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
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    16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
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    NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...
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