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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,261 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
TopHat2 with genes lacking introns by valei
Started by valei, 06-08-2012, 02:12 AM
1 response
1,797 views
0 reactions
 Last Post Dario1984
by Dario1984
06-11-2012, 05:00 PM  
Alignment based sizing of inserts by Smriti
Started by Smriti, 06-11-2012, 04:30 PM
1 response
1,493 views
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 Last Post ECO
by ECO
06-11-2012, 04:57 PM  
Annotation in GFF3 by Daniel Fernandez
Started by Daniel Fernandez, 06-09-2012, 10:41 PM
2 responses
3,063 views
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 Last Post Daniel Fernandez
by Daniel Fernandez
06-11-2012, 03:51 PM  
IlluminaBasecallsToSam - specify directory with _barcode.txt files? by kga1978
Started by kga1978, 06-11-2012, 01:58 PM
0 responses
1,629 views
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 Last Post kga1978
by kga1978
06-11-2012, 01:58 PM  
Database for codon number by johnsequence
Started by johnsequence, 06-11-2012, 06:14 AM
2 responses
2,256 views
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 Last Post johnsequence
by johnsequence
06-11-2012, 07:13 AM  
covert from wig to bed format by paolo.kunder
Started by paolo.kunder, 06-11-2012, 04:39 AM
1 response
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 Last Post adamdeluca
by adamdeluca
06-11-2012, 06:55 AM  
Bowtie2 single seq mapping by sigma
Started by sigma, 06-11-2012, 02:30 AM
1 response
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 Last Post sigma
by sigma
06-11-2012, 06:48 AM  
New: empirical splice junction finder from RNA-seq data by DougB
Started by DougB, 04-23-2010, 10:30 AM
3 responses
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 Last Post paulorapazote
by paulorapazote
06-11-2012, 04:49 AM  
search fasta by maria_mari
Started by maria_mari, 06-09-2012, 01:54 AM
2 responses
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 Last Post GenoMax
by GenoMax
06-11-2012, 03:28 AM  
how does varscan somatic compute variant allele frequency? by genomicist
Started by genomicist, 06-11-2012, 03:21 AM
0 responses
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 Last Post genomicist
by genomicist
06-11-2012, 03:21 AM  
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