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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,261 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
BWA error by Robby
Started by Robby, 07-27-2011, 02:49 AM
4 responses
2,379 views
0 reactions
 Last Post gaffa
by gaffa
07-29-2011, 12:30 AM  
Help:scaffold 2 contigs! by rogerholmes.novogene
Started by rogerholmes.novogene, 07-27-2011, 02:16 AM
11 responses
9,584 views
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 Last Post rogerholmes.novogene
by rogerholmes.novogene
07-28-2011, 10:05 PM  
What is read depth -D100 means in samtools? by ketan_bnf
Started by ketan_bnf, 01-25-2011, 02:12 AM
1 response
3,816 views
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 Last Post Shambala
by Shambala
07-28-2011, 06:54 PM  
Do anyone have compiled Mac OSX version of helisphere? by feng
Started by feng, 07-28-2011, 12:16 PM
0 responses
1,595 views
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 Last Post feng
by feng
07-28-2011, 12:16 PM  
Pathseq not in the cloud by lorddoskias
Started by lorddoskias, 07-28-2011, 02:25 AM
0 responses
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 Last Post lorddoskias
by lorddoskias
07-28-2011, 02:25 AM  
Peak finding tools by vaibhav_jain
Started by vaibhav_jain, 07-27-2011, 05:17 AM
3 responses
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 Last Post vaibhav_jain
by vaibhav_jain
07-28-2011, 02:15 AM  
The test for cuffmerge by fgh1124
Started by fgh1124, 05-30-2011, 07:24 AM
5 responses
5,276 views
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 Last Post blue mood
by blue mood
07-28-2011, 01:45 AM  
has anyone tried variant detection with RNA-seq using GATK? by mard
Started by mard, 07-28-2011, 12:13 AM
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 Last Post mard
by mard
07-28-2011, 12:13 AM  
strand specific wig files by frymor
Started by frymor, 07-27-2011, 10:47 PM
0 responses
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 Last Post frymor
by frymor
07-27-2011, 10:47 PM  
Any suggestion for calculating overall Phred scale quality score for a sequence? by sulicon
Started by sulicon, 07-26-2011, 04:06 PM
3 responses
5,478 views
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 Last Post srasdk
by srasdk
07-27-2011, 08:10 PM  
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