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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,261 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
IGV: how to view large (>1MB) fragment in a window by shuang
Started by shuang, 07-20-2011, 11:34 AM
1 response
3,286 views
0 reactions
 Last Post Jim Robinson
by Jim Robinson
07-21-2011, 08:37 AM  
calling Heterozygous SNPs with samtools mpileup by egatti
Started by egatti, 07-21-2011, 07:28 AM
1 response
5,657 views
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 Last Post swbarnes2
by swbarnes2
07-21-2011, 08:16 AM  
ideogram by anagari
Started by anagari, 07-21-2011, 07:32 AM
0 responses
1,088 views
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 Last Post anagari
by anagari
07-21-2011, 07:32 AM  
Extract perfectly mapped reads from SAM/BAM file by Graham Etherington
Started by Graham Etherington, 07-20-2011, 04:45 AM
2 responses
7,040 views
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 Last Post nilshomer
by nilshomer
07-21-2011, 07:27 AM  
Mira assembly -shell script by robelb4
Started by robelb4, 07-21-2011, 06:23 AM
2 responses
3,230 views
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 Last Post robelb4
by robelb4
07-21-2011, 06:57 AM  
password to decrypt files in dbgap by rafi bondi
Started by rafi bondi, 07-21-2011, 02:07 AM
2 responses
2,242 views
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 Last Post rafi bondi
by rafi bondi
07-21-2011, 06:51 AM  
tool to merge pileup by sbaheti
Started by sbaheti, 06-23-2011, 08:24 PM
5 responses
5,036 views
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 Last Post mgolo
by mgolo
07-21-2011, 06:10 AM  
sff_extract problems by clostridium40
Started by clostridium40, 07-19-2011, 01:05 PM
2 responses
2,384 views
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 Last Post Eric Fournier
by Eric Fournier
07-21-2011, 05:08 AM  
What does "-" allele mean in dbSNP? by PeteH
Started by PeteH, 07-21-2011, 02:48 AM
3 responses
2,181 views
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 Last Post gringer
by gringer
07-21-2011, 04:47 AM  
Does tophat allow indel mapping in reads? by louis7781x
Started by louis7781x, 07-19-2011, 06:10 PM
3 responses
2,663 views
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 Last Post louis7781x
by louis7781x
07-21-2011, 04:26 AM  
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