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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc
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Started by laura, 05-09-2011, 04:42 AM
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35 responses
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by laura
12-05-2013, 02:37 AM
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Started by sci_guy, 01-23-2008, 11:19 PM
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236 responses
683,035 views
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by ECO
12-25-2009, 06:45 PM
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Started by Giles, 04-07-2011, 09:50 AM
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3 responses
2,392 views
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by maubp
04-08-2011, 02:14 AM
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Started by Martino, 04-07-2011, 07:28 AM
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7 responses
3,165 views
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by AdamB
04-08-2011, 02:13 AM
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Started by rururara, 04-07-2011, 10:44 PM
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1 response
5,645 views
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by Thorondor
04-08-2011, 12:48 AM
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Started by jeremyrualosr, 03-23-2011, 05:47 PM
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5 responses
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Started by apratap, 04-07-2011, 02:35 PM
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by apratap
04-07-2011, 02:35 PM
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Started by hong_sunwoo, 04-06-2011, 01:17 AM
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1 response
1,948 views
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by muzz56
04-07-2011, 12:38 PM
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Started by PFS, 04-07-2011, 06:57 AM
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2 responses
2,120 views
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by PFS
04-07-2011, 09:34 AM
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Started by andreitudor, 04-07-2011, 06:29 AM
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by andreitudor
04-07-2011, 06:29 AM
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Started by vidhya, 04-06-2011, 12:11 PM
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3 responses
4,839 views
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by vidhya
04-07-2011, 06:17 AM
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Started by Greg, 10-20-2010, 11:41 AM
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2 responses
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by hlwright
04-07-2011, 02:42 AM
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by GATTACATLove this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
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07-01-2026, 11:43 AM -
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by SEQadmin2
I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.
Here are nine questions we think about, in roughly the order they matter, before...-
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by SEQadmin2
Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.
The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
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06-02-2026, 10:05 AM -
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Started by SEQadmin2, Today, 11:05 AM
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Started by SEQadmin2, 07-02-2026, 11:08 AM
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07-02-2026, 11:08 AM
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Started by SEQadmin2, 06-30-2026, 05:37 AM
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06-30-2026, 05:37 AM
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