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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Cuffdiff merged.gtf to UCSC bed format with gene_id by Ashu123
Started by Ashu123, 10-30-2015, 02:57 AM
1 response
3,258 views
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 Last Post Ashu123
by Ashu123
10-30-2015, 04:29 AM  
Storing Result Of Python Command Into a Variable by AnushaC
Started by AnushaC, 10-29-2015, 09:38 PM
2 responses
1,219 views
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 Last Post wolma
by wolma
10-30-2015, 01:19 AM  
bwa mem mapping quality on ambiguous mapping reads by yinshe
Started by yinshe, 10-28-2015, 04:38 AM
7 responses
5,686 views
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 Last Post Brian Bushnell
by Brian Bushnell
10-29-2015, 11:55 PM  
Trouble Downloading bamtools on macosx by nickhill
Started by nickhill, 10-29-2015, 04:29 PM
5 responses
1,711 views
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 Last Post nickhill
by nickhill
10-29-2015, 06:59 PM  
Coverage amplicon by pingu
Started by pingu, 10-29-2015, 03:29 AM
3 responses
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 Last Post cmccabe
by cmccabe
10-29-2015, 04:16 PM  
strand-specificity in RSEM by shurjo
Started by shurjo, 10-29-2015, 09:25 AM
0 responses
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 Last Post shurjo
by shurjo
10-29-2015, 09:25 AM  
Filtering BLAST results using BioPerl by uloeber
Started by uloeber, 10-26-2015, 09:29 AM
1 response
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 Last Post uloeber
by uloeber
10-29-2015, 08:18 AM  
Pearson correlation in R by gene_x
Started by gene_x, 02-19-2013, 09:19 PM
10 responses
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 Last Post rory
by rory
10-29-2015, 07:25 AM  
How to create an amplicon reference for Bismark analysis by [email protected]
Started by [email protected], 10-29-2015, 06:22 AM
1 response
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 Last Post dpryan
by dpryan
10-29-2015, 06:34 AM  
HTSeq: A Python framework to work with high-throughput sequencing data by Simon Anders
Started by Simon Anders, 04-22-2010, 05:10 AM
191 responses
90,002 views
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 Last Post Simon Anders
by Simon Anders
10-29-2015, 06:33 AM  
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