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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
DESeq2 question in dealing with time course data. by liuse
Started by liuse, 03-05-2014, 01:31 AM
12 responses
11,338 views
0 reactions
 Last Post somi06
by somi06
03-19-2015, 03:10 AM  
Where to obtain HumanNCBI37_UCSC reference sequence? by davecurtis
Started by davecurtis, 03-17-2015, 04:29 AM
4 responses
1,599 views
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 Last Post davecurtis
by davecurtis
03-19-2015, 01:52 AM  
IDBA-UD doesnt respond by vpi
Started by vpi, 12-12-2013, 02:40 AM
1 response
2,943 views
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 Last Post perishleaf
by perishleaf
03-18-2015, 04:41 PM  
Regarding Synteny analysis by deepika123
Started by deepika123, 03-17-2015, 10:37 PM
1 response
1,235 views
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 Last Post cascoamarillo
by cascoamarillo
03-18-2015, 08:31 AM  
POLL - BWA vs Bowtie 2 by Sequencing.com
Started by Sequencing.com, 03-13-2015, 02:22 PM
8 responses
4,592 views
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 Last Post Ahaswer
by Ahaswer
03-18-2015, 06:29 AM  
Circularizing and trimming with toAmos and minimus2 by shadow19c
Started by shadow19c, 03-18-2015, 03:06 AM
0 responses
1,340 views
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 Last Post shadow19c
by shadow19c
03-18-2015, 03:06 AM  
How to Set Clipping Penalty in BWA ALN? by svos
Started by svos, 03-17-2015, 02:07 AM
4 responses
2,824 views
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 Last Post svos
by svos
03-17-2015, 11:36 PM  
TrainGlimmerHMM error 28 Incorrect order for exon coordinates by angel-sakura
Started by angel-sakura, 03-15-2015, 05:24 PM
2 responses
2,160 views
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 Last Post angel-sakura
by angel-sakura
03-17-2015, 09:49 PM  
How does BWA deal with multi mapping reads? by metheuse
Started by metheuse, 03-16-2015, 01:38 PM
5 responses
12,070 views
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 Last Post Brian Bushnell
by Brian Bushnell
03-17-2015, 11:08 AM  
awk, perl, or sed to parse delins by cmccabe
Started by cmccabe, 03-17-2015, 10:02 AM
0 responses
1,050 views
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 Last Post cmccabe
by cmccabe
03-17-2015, 10:02 AM  
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