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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Cuffdiff is confusing gene expression for splicing by Helical
Started by Helical, 10-11-2013, 04:52 AM
1 response
1,489 views
0 reactions
 Last Post mondongho
by mondongho
09-03-2014, 05:36 AM  
Bowtie2 paired-end reads, sometimes read 2 is output first by biocomputer
Started by biocomputer, 08-27-2014, 10:44 PM
6 responses
3,390 views
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 Last Post dpryan
by dpryan
09-03-2014, 01:18 AM  
SOAPDenovo-Trans Error - Abored (Core Dumped) by milo0615
Started by milo0615, 08-18-2014, 10:58 AM
1 response
2,446 views
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 Last Post longbow0
by longbow0
09-03-2014, 12:33 AM  
Summarizing PCA in DESeq2 by cacti
Started by cacti, 05-06-2014, 09:52 AM
8 responses
6,140 views
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 Last Post dpryan
by dpryan
09-02-2014, 11:39 PM  
Using cd-hit to merge paired-end data then cluster by SymbioNGS
Started by SymbioNGS, 08-06-2014, 07:21 PM
1 response
2,779 views
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 Last Post SymbioNGS
by SymbioNGS
09-02-2014, 10:47 PM  
Filtering out false positive structural variants by tahamasoodi
Started by tahamasoodi, 02-17-2013, 12:13 AM
15 responses
6,263 views
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 Last Post vyellapa
by vyellapa
09-02-2014, 08:25 PM  
250bp reads in idba_ud by kcchan
Started by kcchan, 04-08-2013, 01:21 PM
5 responses
10,025 views
1 reaction
 Last Post tsucheta
by tsucheta
09-02-2014, 08:11 PM  
Tool for SNP calling and annotaion by mathew
Started by mathew, 07-25-2012, 07:12 PM
2 responses
1,902 views
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 Last Post Morgane_AUS
by Morgane_AUS
09-02-2014, 06:47 PM  
16s some qiime questions by litali
Started by litali, 10-24-2013, 01:24 AM
7 responses
4,440 views
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 Last Post rajal.debnath
by rajal.debnath
09-02-2014, 07:33 AM  
where to download (or how to build) bowtie index for mouse ribosomal rna by joel.k
Started by joel.k, 09-02-2014, 06:12 AM
1 response
3,080 views
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 Last Post GenoMax
by GenoMax
09-02-2014, 07:31 AM  
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