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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
0 reactions
 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Calculating allele frequency from VCF file by bio_informatics
Started by bio_informatics, 09-29-2014, 01:57 PM
3 responses
13,889 views
0 reactions
 Last Post Wellhek
by Wellhek
01-15-2020, 08:30 PM  
Gap open and extend penalties in Needleman-Wunsch algorithm by bheida
Started by bheida, 01-15-2020, 10:36 AM
0 responses
2,532 views
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 Last Post bheida
by bheida
01-15-2020, 10:36 AM  
Save time and money through improved onboarding of your NGS data scientists by ecSeq Bioinformatics
Started by ecSeq Bioinformatics, 01-15-2020, 03:30 AM
0 responses
33 views
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 Last Post ecSeq Bioinformatics
by ecSeq Bioinformatics
01-15-2020, 03:30 AM  
Looking for advice on analysing scRNA-seq data from patients with Seurat by Banjulhu
Started by Banjulhu, 01-14-2020, 03:59 AM
0 responses
1,196 views
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 Last Post Banjulhu
by Banjulhu
01-14-2020, 03:59 AM  
optimize a execution of a pindel process by cmccabe
Started by cmccabe, 01-11-2020, 04:52 AM
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 Last Post cmccabe
by cmccabe
01-11-2020, 04:52 AM  
bbduk and removing adapters of varying length by unionicola
Started by unionicola, 01-09-2020, 02:40 PM
2 responses
4,841 views
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 Last Post unionicola
by unionicola
01-10-2020, 09:08 AM  
Any user friendly way to find rare mutations in whole genome raw? by Larendy
Started by Larendy, 01-07-2020, 02:12 PM
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2,847 views
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 Last Post Larendy
by Larendy
01-07-2020, 02:12 PM  
Tophat2 ignoring -o and always writing to ./tophat_out by afkoeppel
Started by afkoeppel, 02-08-2013, 02:08 PM
2 responses
1,908 views
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 Last Post Lafferty52
by Lafferty52
01-05-2020, 10:24 AM  
Scaffolding with reads from other individuals by adamrork
Started by adamrork, 01-03-2020, 09:26 PM
0 responses
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 Last Post adamrork
by adamrork
01-03-2020, 09:26 PM  
samtools mpileup bug by drdna
Started by drdna, 01-02-2020, 12:05 PM
0 responses
1,455 views
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 Last Post drdna
by drdna
01-02-2020, 12:05 PM  
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