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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,261 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Cegma faq by kbradnam
Started by kbradnam, 04-17-2014, 09:15 PM
0 responses
1,341 views
0 reactions
 Last Post kbradnam
by kbradnam
04-17-2014, 09:15 PM  
bwa-meth and bs-seq comparison by brentp
Started by brentp, 02-04-2014, 05:36 AM
16 responses
10,840 views
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 Last Post PeteH
by PeteH
04-17-2014, 08:31 PM  
Why do Cufflinks and Cuffdiff use different default normalization methods? by Daytwa
Started by Daytwa, 04-17-2014, 04:17 PM
0 responses
1,295 views
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 Last Post Daytwa
by Daytwa
04-17-2014, 04:17 PM  
SSPACE and number of mate pairs utilized? by milw
Started by milw, 04-17-2014, 01:17 PM
1 response
1,404 views
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 Last Post luc
by luc
04-17-2014, 02:58 PM  
Genomic coordinates to gene names by Layla
Started by Layla, 04-22-2009, 02:37 PM
8 responses
13,752 views
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 Last Post nturaga
by nturaga
04-17-2014, 02:23 PM  
bwa sampe error by m_elena_bioinfo
Started by m_elena_bioinfo, 07-08-2013, 05:08 AM
13 responses
12,269 views
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 Last Post earonesty
by earonesty
04-17-2014, 11:35 AM  
Using SRMA output to call variants with mpileup by gavin.oliver
Started by gavin.oliver, 07-19-2011, 04:37 AM
3 responses
2,455 views
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 Last Post madonjoe
by madonjoe
04-17-2014, 09:20 AM  
Mosaik Aligner/IUPAC codes by lwhitmore
Started by lwhitmore, 04-12-2014, 02:10 PM
15 responses
2,720 views
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 Last Post Brian Bushnell
by Brian Bushnell
04-17-2014, 08:48 AM  
gff3 to RefFlat file for picard tools by ykdang
Started by ykdang, 04-17-2014, 08:47 AM
0 responses
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 Last Post ykdang
by ykdang
04-17-2014, 08:47 AM  
Short Read Micro re-Aligner (beta release) by nilshomer
Started by nilshomer, 04-21-2010, 04:49 PM
27 responses
13,212 views
0 reactions
 Last Post madonjoe
by madonjoe
04-17-2014, 08:29 AM  
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