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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
unknown option -shortPaired3 in velveth by JonB
Started by JonB, 03-16-2014, 11:58 PM
2 responses
2,989 views
0 reactions
 Last Post JonB
by JonB
03-17-2014, 03:36 AM  
Clarification on Tohpat/Cufflinks with Ensembl by sindrle
Started by sindrle, 03-05-2014, 07:06 PM
4 responses
1,860 views
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 Last Post sindrle
by sindrle
03-17-2014, 02:59 AM  
Local BLAST installation on Linux by lindashirley99
Started by lindashirley99, 09-01-2011, 05:04 AM
10 responses
22,780 views
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 Last Post mastal
by mastal
03-17-2014, 02:08 AM  
Bowtie2 on very short sequences by mikael
Started by mikael, 03-16-2014, 11:41 PM
0 responses
22 views
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 Last Post mikael
by mikael
03-16-2014, 11:41 PM  
VCFtools empty results for TajimaD calculation by Baoqing
Started by Baoqing, 03-16-2014, 06:40 PM
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 Last Post Baoqing
by Baoqing
03-16-2014, 06:40 PM  
Tophat sorted bam error by arcolombo698
Started by arcolombo698, 03-14-2014, 03:09 PM
4 responses
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 Last Post arcolombo698
by arcolombo698
03-16-2014, 05:14 PM  
which denovo assemble to use for assembly of meta-transcriptome data by bambus
Started by bambus, 11-22-2013, 05:43 AM
3 responses
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 Last Post gringer
by gringer
03-16-2014, 04:34 PM  
Are Cuffdiff q-values and p-values reliable when multiple treatments are analyzed? by gwilymh
Started by gwilymh, 03-04-2014, 03:01 PM
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 Last Post tpitz
by tpitz
03-16-2014, 11:32 AM  
effective genome size for rat (rn5) for MACS analysis by chpawan
Started by chpawan, 03-16-2014, 05:41 AM
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 Last Post chpawan
by chpawan
03-16-2014, 05:41 AM  
bowtie map only first 50 nt of reads by jgibbons1
Started by jgibbons1, 03-14-2014, 12:27 PM
4 responses
1,628 views
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 Last Post dpryan
by dpryan
03-15-2014, 06:28 AM  
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