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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
[GlimmerHMM] anyone who has successfully run? by syintel87
Started by syintel87, 02-13-2014, 06:35 PM
1 response
1,317 views
0 reactions
 Last Post jimmybee
by jimmybee
02-14-2014, 08:01 PM  
bwa - unrecognized command 'aln' by frymor
Started by frymor, 02-12-2014, 01:36 AM
5 responses
4,737 views
0 reactions
 Last Post vogelw
by vogelw
02-14-2014, 10:43 AM  
How does BWA MEM handle reads shorter than 70bp? by persorrels
Started by persorrels, 02-14-2014, 10:31 AM
0 responses
1,857 views
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 Last Post persorrels
by persorrels
02-14-2014, 10:31 AM  
Problem with Haloplex variant call by induivain
Started by induivain, 02-14-2014, 08:38 AM
0 responses
1,500 views
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 Last Post induivain
by induivain
02-14-2014, 08:38 AM  
RNA-seq pipeline on Ion-Proton data by super0925
Started by super0925, 02-14-2014, 06:59 AM
0 responses
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 Last Post super0925
by super0925
02-14-2014, 06:59 AM  
Mapping stranded smallRNA reads with TopHat by JonB
Started by JonB, 02-14-2014, 05:27 AM
1 response
2,255 views
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 Last Post GenoMax
by GenoMax
02-14-2014, 06:05 AM  
trim_galore cutadapt error by daveiles
Started by daveiles, 02-13-2014, 09:48 AM
13 responses
4,439 views
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 Last Post daveiles
by daveiles
02-14-2014, 06:02 AM  
Bowtie2 - Own Indexes by Coryza
Started by Coryza, 02-14-2014, 04:48 AM
1 response
1,189 views
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 Last Post GenoMax
by GenoMax
02-14-2014, 04:54 AM  
tophat2 -o/--output-dir unavailable by wskwxf
Started by wskwxf, 02-09-2014, 07:59 PM
5 responses
1,773 views
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 Last Post wskwxf
by wskwxf
02-13-2014, 06:43 PM  
How to analyze these two figures by capricy
Started by capricy, 02-02-2014, 07:22 PM
4 responses
1,840 views
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 Last Post capricy
by capricy
02-13-2014, 01:16 PM  
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