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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
base position by cmccabe
Started by cmccabe, 01-15-2014, 05:57 AM
1 response
1,234 views
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 Last Post dpryan
by dpryan
01-15-2014, 06:08 AM  
Sequin converter by ebioman
Started by ebioman, 01-15-2014, 05:28 AM
0 responses
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 Last Post ebioman
by ebioman
01-15-2014, 05:28 AM  
Mapping between GRCh37 and GRCh37.p13 by gar_ag
Started by gar_ag, 01-15-2014, 01:20 AM
1 response
2,362 views
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 Last Post TiborNagy
by TiborNagy
01-15-2014, 05:26 AM  
How to extract split-reads from Pindel output by foolishbrat
Started by foolishbrat, 01-15-2014, 03:19 AM
0 responses
2,088 views
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 Last Post foolishbrat
by foolishbrat
01-15-2014, 03:19 AM  
Trinity Assembly, Isoforms vs. Paralogs? by BGould
Started by BGould, 03-18-2012, 07:49 AM
1 response
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 Last Post yvan.wenger
by yvan.wenger
01-15-2014, 01:51 AM  
DEXSeq read.HTSeqCounts problem by Erwan
Started by Erwan, 01-09-2014, 03:43 AM
4 responses
2,327 views
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 Last Post Erwan
by Erwan
01-15-2014, 01:24 AM  
How to assign values to size factor (DESeq) by kentnf
Started by kentnf, 12-07-2011, 07:12 AM
4 responses
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 Last Post frymor
by frymor
01-15-2014, 12:48 AM  
GTF reference files that work with TopHat/Cufflinks by marcora
Started by marcora, 12-06-2010, 12:09 PM
23 responses
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 Last Post eastasiasnow
by eastasiasnow
01-15-2014, 12:10 AM  
Double peaks for BOTH forward and reverse tags in macs2 model of Chip-seq data - shal by feralBiologist
Started by feralBiologist, 01-14-2014, 03:09 PM
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 Last Post feralBiologist
by feralBiologist
01-14-2014, 03:09 PM  
BFcounter output by fznajar
Started by fznajar, 01-12-2014, 09:20 AM
2 responses
1,487 views
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 Last Post fznajar
by fznajar
01-14-2014, 02:10 PM  
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