Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • zee
    NGS specialist
    • Apr 2008
    • 249

    #1

    OpenGE on Redhat

    Hi

    I am trying to get the openGE binaries working on Redhat enterprise machines. openge fails with the following error:


    Code:
    openge: symbol lookup error: openge: undefined symbol: _ZZN8BamTools12IBamIODevice14SetErrorStringERKSsS2_E9SEPARATOR
    I am using Redhat 6, linux 64-bit.

    Code:
    Linux 2.6.18-238.el5 #1 SMP Sun Dec 19 14:22:44 EST 2010 x86_64 x86_64 x86_64 GNU/Linux
    Is there something I am missing?
  • adaptivegenome
    Super Moderator
    • Nov 2009
    • 436

    #2
    We tested the binaries on an EC2 image of RHEL. It works fine there. However, we will take a look at a local installation of RedHat to see if we can reproduce the error as we would like users to be able to get going with the binaries.

    In the worst case, you would have to install zlib, boost, and bamtools; and then compile from source.

    Hopefully by the next release we can supplement the binaries with RPM and DEB packages. Should make install easier.

    Comment

    • adaptivegenome
      Super Moderator
      • Nov 2009
      • 436

      #3
      We now have an RPM for OpenGE! Send me a direct PM and ill share it with you. The next release of OpenGE will feature source, binaries, RPM, and DEB.

      Comment

      Latest Articles

      Collapse

      • SEQadmin2
        16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
        by SEQadmin2




        NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification, detection...
        Yesterday, 06:46 AM
      • SEQadmin2
        Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
        by SEQadmin2



        Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

        Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
        ...
        10-14-2026, 09:55 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 10-28-2026, 09:57 AM
      0 responses
      30 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-28-2026, 09:51 AM
      0 responses
      21 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-22-2026, 11:13 AM
      0 responses
      71 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-22-2026, 10:48 AM
      0 responses
      48 views
      0 reactions
      Last Post SEQadmin2  
      Working...