Originally posted by tir_al
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Sounds like a promising way to store genomic data in the long run if indexed to hg19? -
I tried it on 75bp, cca 80 mil. reads, pair end bam file. And it crammed 3.6 GB file into a 257MB archive.Leave a comment:
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tir_al,
What is the compression ratio? Curious to see before I take a dive with my own data.Leave a comment:
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Tnx for the prompt answer!
I just tried cram today. The compression ratio is extremely impressive, but it's a too slow for my needs.Leave a comment:
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CRAM is reference based compression so may or may not be of interest for you. http://www.ebi.ac.uk/ena/about/cram_toolkit/Leave a comment:
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FastQ/BAM compression
Does anybody know of a more recent comparison of algorithms for fastq/bam compression, than this thread?
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