RepeatMasker report of GRCh37
Hi everyone,
I recently used RepeatMasker to analyze the DNA sequences of broken fragments of some cancer patients' chromosomes. I finnaly got the "tbl" format reports, which are summary reports and contain percentage data of SINEs, LINEs, LTR elements, and so on.
Then I need to compare these summary report to the repeat data of whole genome and each chromosome of human. Since I used human genome of version GRCh37 to do other anlysis, I have been looking for the repeat reports of this version. However, I could not find similar reports of human genome or any chromosomes in the internet.
I also tried RepeatMasker to process the DNA sequence of each human chromosome (GRCh37), but it always failed to complete chromosome 1, 2, 5, 8, and no error message reported.
So is there anybody has the data or know about that? I would greatly appreciate it if anyone can help.
Thanks!
Ning
I recently used RepeatMasker to analyze the DNA sequences of broken fragments of some cancer patients' chromosomes. I finnaly got the "tbl" format reports, which are summary reports and contain percentage data of SINEs, LINEs, LTR elements, and so on.
Then I need to compare these summary report to the repeat data of whole genome and each chromosome of human. Since I used human genome of version GRCh37 to do other anlysis, I have been looking for the repeat reports of this version. However, I could not find similar reports of human genome or any chromosomes in the internet.
I also tried RepeatMasker to process the DNA sequence of each human chromosome (GRCh37), but it always failed to complete chromosome 1, 2, 5, 8, and no error message reported.
So is there anybody has the data or know about that? I would greatly appreciate it if anyone can help.
Thanks!
Ning