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  • foolishbrat
    Member
    • Nov 2008
    • 45
    #1

    Finding Raw 454 Data

    Is there any repository where I can download raw 454 Data?

    I am aware of NCBI - SRA. But it comes in forms of FASTQ.
    It does not suits my need for assessing insertion and deletion.
    For they cannot be accounted based on the quality score only(?)
    Tags: repository database
  • flxlex
    Moderator
    • Nov 2008
    • 412
    #2
    The SRA also allows you to download sff files...

    Comment

    • BaCh
      Member
      • May 2008
      • 81
      #3
      Originally posted by flxlex View Post
      The SRA also allows you to download sff files...
      Nope, not anymore. They removed it since a few months.

      In the case of 454 paired-end data that's utterly bad as the FASTQ files one can download are riddled over and over with linkers. At least the data sets I looked at.

      Been a long time since I wanted to write them about that ... I just don't find the time.

      B.

      Comment

      • maubp
        Peter (Biopython etc)
        • Jul 2009
        • 1544
        #4
        Some of the in progress projects at the Sanger Institute make raw SFF files available.

        Comment

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