synteny from transcriptomic data

[parul gupta]

Hello all,
I want to ask how one can plot synteny between two transcriptomic data (454 pyrosequencing) from same species but different cultivars.

Thanks
Parul

[cliffbeall]

You generally wouldn't get synteny information from transcriptomics, you need genome sequences (sequence of DNA instead of RNA).

[parul gupta]

Thanks cliffbeall
ya... this I know, that genome sequence is required for synteny plot but i am searching a tool to compare two transcriptomes.