unclassified sequences using homd taxonomy

elizondas

Member

Join Date: Nov 2013

Posts: 14
- Share
- Tweet
#1

unclassified sequences using homd taxonomy

02-02-2015, 10:10 AM

Hi all.

I am analyzing the human nasopharynx flora following the mothur SOP for 454, and I was wondering how I could classify the sequences the unclassified sequences that have a confident score below my threshold? I am interesting in potential pathogens that I haven't been able to identify using different taxonomy datasets: greengens, RDP ( don't get the sp level), homd database...

Thanks a lot in advance
Tags: None

Previous template Next

Differential Expression and Data Visualization: Recommended Tools for Next-Level Sequencing Analysis

by seqadmin

After covering QC and alignment tools in the first segment and variant analysis and genome assembly in the second segment, we’re wrapping up with a discussion about tools for differential gene expression analysis and data visualization. In this article, we include recommendations from the following experts: Dr. Mark Ziemann, Senior Lecturer in Biotechnology and Bioinformatics, Deakin University; Dr. Medhat Mahmoud Postdoctoral Research Fellow at Baylor College of Medicine;...
- Channel: Articles
05-23-2023, 12:26 PM
Variant Analysis and Genome Assembly: Recommended Tools for Next-Level Sequencing Analysis

by seqadmin

Continuing from our previous article, we share variant analysis and genome assembly tools recommended by our experts Dr. Medhat Mahmoud, Postdoctoral Research Fellow at Baylor College of Medicine, and Dr. Ming "Tommy" Tang, Director of Computational Biology at Immunitas and author of From Cell Line to Command Line.

Variant detection and analysis tools
Mahmoud classifies variant detection work into two main groups: short variants (<50...
- Channel: Articles
05-19-2023, 10:03 AM
QC, Alignment, and Mapping: Recommended Tools for Next-Level Sequencing Analysis

by seqadmin

With new tools and computational resources being released regularly, it can be hard to determine which are best suited for the analysis process and which older tools continue to be maintained. In an effort to assist the sequencing community, we interviewed three highly skilled bioinformaticians about their recommended tools for several important analysis applications.

Quality control and preprocessing tools
“Garbage in, garbage out” is a popular...
- Channel: Articles
05-16-2023, 10:11 AM

Topics	Statistics	Last Post
Exploring French-Canadian Ancestry: Insights into Migration, Settlement Patterns, and Genetic Structure by seqadmin Started by seqadmin, 05-26-2023, 09:22 AM	0 responses 8 views 0 likes	Last Post by seqadmin 05-26-2023, 09:22 AM
Largest Catalog of Human Protein-Coding Variation Unveiled by seqadmin Started by seqadmin, 05-24-2023, 09:49 AM	0 responses 15 views 0 likes	Last Post by seqadmin 05-24-2023, 09:49 AM
Introducing ProtVar: A Web Tool for Contextualizing and Interpreting Human Missense Variation in Proteins by seqadmin Started by seqadmin, 05-23-2023, 07:14 AM	0 responses 30 views 0 likes	Last Post by seqadmin 05-23-2023, 07:14 AM
AMP Releases Recommendations for NGS Germline Variant Confirmation by seqadmin Started by seqadmin, 05-18-2023, 11:36 AM	0 responses 116 views 0 likes	Last Post by seqadmin 05-18-2023, 11:36 AM

Header Leaderboard Ad

unclassified sequences using homd taxonomy

Announcement

unclassified sequences using homd taxonomy

Latest Articles

ad_right_rmr

News